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First go to File - Properties and set the file locations on each tab. Make sure you check the "start all new projects with these settings" box and those file locations will then be used on all new projects.
Next go to Options - Preferences and change any file locations listed there.
Finally, when you open/render/anything else that brings up a file dialog, THAT is typically where it will reopen the next time you open any file dialog. So if you open in one location and then tell it to render, you'll typically see the location where you last opened and need to browse to where you really want it rendered.
It's possible that some of this could be resolved for you via scripting if you're using the pro version. For example, if you only rendered via a script and the script knew where you wanted all renders saved then it could automatically go to that location.
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