I made the first test with my dual FH1 for stereoscopic.
copied from the SD card to the hardisk, then converted with HDLink (prospectHD).
a bit long (more than 4 time realtime), but converted without problem to avi.
then played directly with stereoscopic player on a Zalman Trimon.
Very nice result, no need to adjust anything, plays right from the camera to the 3D screen.

If you're going directly to Cineform, try converting directly from SD to Cineform on the HDD.. there's no absolute need to copy to HD first. This will usually be faster, particularly if you're conversion was to be to/from the same HDD. Depending on the SDHC interface used, this is also where Class 6 vs. Class 4 may become obvious.

sample video files
 

Hey, Could someone re-upload the sample video files? I'd like to see how well my computer handles them.

Thanks,
-Greg